Transcript: ENSDART00000110871.4 nkx2.4a-201

Description

NK2 homeobox 4a [Source:ZFIN;Acc:ZDB-GENE-030131-6336]

Gene Synonyms

fi48a12, wu:fi48a12, zgc:171531

Location

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 134 variant alleles and maps to 113 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110871.4	nkx2.4a-201	1684	345aa	ENSDARP00000104286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DFT3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000155484.2	nkx2.4a-202	1350	336aa	ENSDARP00000128532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DG22	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,684 bps, Translation length: 345 residues

Version

ENSDART00000110871.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.