Transcript: ENSDART00000102257.4 alox5b.3-201

Description

arachidonate 5-lipoxygenase b, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-330]

Gene Synonyms

ALOX3c, cb171, sb:cb171, zgc:110251

Location

Chromosome 15: 592,253-604,353 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 26 domains and features, is associated with 345 variant alleles and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069966.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102257.4	alox5b.3-201	2576	676aa	ENSDARP00000093033.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R442	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000188882.1	alox5b.3-204	4090	676aa	ENSDARP00000144869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R442	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153719.2	alox5b.3-202	962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000155380.2	alox5b.3-203	434	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,576 bps, Translation length: 676 residues

Version

ENSDART00000102257.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000102257.4 alox5b.3-201

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Transcript: ENSDART00000102257.4 alox5b.3-201

Summary

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