Transcript: ENSDART00000086333.6 JARID2-201

Description

jumonji and AT-rich interaction domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-061218-1]

Location

About this transcript

This transcript has 18 exons, is annotated with 35 domains and features, is associated with 23 variant alleles and maps to 127 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000086333.6	JARID2-201	4493	1171aa	ENSDARP00000080768.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F6J7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000187489.1	JARID2-202	4174	1203aa	ENSDARP00000151217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 4,493 bps, Translation length: 1,171 residues

Version

ENSDART00000086333.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.