Gene: col19a1 ENSDARG00000096073

Description

collagen, type XIX, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-090312-196]

Gene Synonyms

si:dkey-49l3.2, stumpy, sty, zgc:153049

Location

GRCz11:CM002897.2

About this gene

This gene has 2 transcripts (splice variants), 98 orthologues, 52 paralogues and is associated with 3 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110976.4	col19a1-202	1193	303aa	ENSDARP00000098972.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5Q9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000187708.1	col19a1-203	874	290aa	ENSDARP00000145561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PX48	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary