Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:ch211-214b16.3 ENSDARG00000089079

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Description

si:ch211-214b16.3 [Source:ZFIN;Acc:ZDB-GENE-081105-50]

Location

Chromosome 3: 60,285,115-60,308,937 reverse strand.

GRCz11:CM002887.2

About this gene

This gene has 4 transcripts (splice variants), 84 orthologues and 372 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136816.3	si:ch211-214b16.3-201	4001	1330aa	ENSDARP00000117178.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QPY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000190524.1	si:ch211-214b16.3-203	2354	730aa	ENSDARP00000148365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RM17	-
ENSDART00000181981.1	si:ch211-214b16.3-202	1517	302aa	ENSDARP00000153131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RUI7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000193313.1	si:ch211-214b16.3-204	1367	252aa	ENSDARP00000155853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QRP0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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