Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: lrch2 ENSDARG00000075580

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Description

leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]

Gene Synonyms

sb:eu904

Location

Chromosome 5: 37,132,016-37,252,111 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 4 transcripts (splice variants), 192 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112312.4	lrch2-201	1842	613aa	ENSDARP00000099188.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RBY2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000185110.1	lrch2-204	1713	570aa	ENSDARP00000152823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PXM7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158614.2	lrch2-202	932	311aa	ENSDARP00000135081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMK7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000166710.2	lrch2-203	643	214aa	ENSDARP00000136443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ILN5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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