Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: soga3b ENSDARG00000075455

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Description

SOGA family member 3b [Source:ZFIN;Acc:ZDB-GENE-081022-198]

Gene Synonyms

zgc:195224

Location

Chromosome 23: 40,452,157-40,466,398 forward strand.

GRCz11:CM002907.2

About this gene

This gene has 4 transcripts (splice variants), 203 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140136.2	soga3b-202	2436	811aa	ENSDARP00000123551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q572	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000184223.1	soga3b-203	1287	428aa	ENSDARP00000153852.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QFR9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000113106.3	soga3b-201	721	210aa	ENSDARP00000100168.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCE8	-
ENSDART00000184658.1	soga3b-204	441	146aa	ENSDARP00000156651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QT82	-

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Summary

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