Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: matn3b ENSDARG00000069265

.

Description

matrilin 3b [Source:ZFIN;Acc:ZDB-GENE-050221-9]

Gene Synonyms

zgc:123028

Location

Chromosome 13: 32,627,444-32,635,885 reverse strand.

GRCz11:CM002897.2

About this gene

This gene has 4 transcripts (splice variants), 181 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145395.3	matn3b-202	1484	478aa	ENSDARP00000122906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5NIW0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000146249.3	matn3b-203	1352	434aa	ENSDARP00000116044.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZD91	-
ENSDART00000100650.6	matn3b-201	1144	299aa	ENSDARP00000091423.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5NJJ7	-
ENSDART00000148040.3	matn3b-204	1099	343aa	ENSDARP00000123200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5NJJ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.