Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: gpnmb ENSDARG00000062688

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Description

glycoprotein (transmembrane) nmb [Source:ZFIN;Acc:ZDB-GENE-060503-106]

Gene Synonyms

si:ch211-155k24.6

Location

Chromosome 19: 20,247,435-20,270,207 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 3 transcripts (splice variants), 205 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000090883.6	gpnmb-201	6461	627aa	ENSDARP00000085316.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F7J7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000144891.3	gpnmb-202	1994	560aa	ENSDARP00000119730.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDN9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000151818.3	gpnmb-203	1973	82aa	ENSDARP00000126111.1	Nonsense mediated decay	I3IT55	-

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Summary

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