Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sgpl1 ENSDARG00000061375

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Description

sphingosine-1-phosphate lyase 1 [Source:ZFIN;Acc:ZDB-GENE-070410-24]

Gene Synonyms

spl, zgc:162153

Location

Chromosome 13: 25,725,547-25,750,910 reverse strand.

GRCz11:CM002897.2

About this gene

This gene has 3 transcripts (splice variants), 211 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111567.4	sgpl1-201	3460	572aa	ENSDARP00000098071.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4QNU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000189333.1	sgpl1-203	5652	574aa	ENSDARP00000147330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q3N8	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000147420.2	sgpl1-202	917	306aa	ENSDARP00000121475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R912	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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