Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sv2ca ENSDARG00000059997

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Description

synaptic vesicle glycoprotein 2Ca [Source:ZFIN;Acc:ZDB-GENE-060526-233]

Gene Synonyms

si:dkey-18p14.1, sv2c

Location

Chromosome 5: 45,976,130-46,066,558 forward strand.

GRCz11:CM002889.2

About this gene

This gene has 2 transcripts (splice variants), 202 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000084024.5	sv2ca-201	2238	745aa	ENSDARP00000078459.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2CF25	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000175670.2	sv2ca-202	2569	728aa	ENSDARP00000143409.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y8C7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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