Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: cntnap2a ENSDARG00000058969

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Description

contactin associated protein like 2a [Source:ZFIN;Acc:ZDB-GENE-120328-3]

Gene Synonyms

zmp:0000000672

Location

Chromosome 24: 17,417,150-18,179,535 reverse strand.

GRCz11:CM002908.2

About this gene

This gene has 5 transcripts (splice variants) and 40 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000155843.3	cntnap2a-202	1491	190aa	ENSDARP00000128907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WFA3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000185619.1	cntnap2a-204	8525	1311aa	ENSDARP00000154768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QPN5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000178326.2	cntnap2a-203	8495	1301aa	ENSDARP00000143321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y870	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000154039.2	cntnap2a-201	4147	1284aa	ENSDARP00000128341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WDP2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000186112.1	cntnap2a-205	3951	1316aa	ENSDARP00000146773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L7NKH5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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