Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: snx6 ENSDARG00000058444

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Description

sorting nexin 6 [Source:ZFIN;Acc:ZDB-GENE-050913-152]

Gene Synonyms

fa55b10, im:7146294, wu:fa55b10, zgc:110798

Location

Chromosome 17: 9,963,436-10,000,339 reverse strand.

GRCz11:CM002901.2

About this gene

This gene has 2 transcripts (splice variants), 237 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148463.3	snx6-201	3131	407aa	ENSDARP00000123712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5C6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000162893.3	snx6-202	1221	406aa	ENSDARP00000133668.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4VA89	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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