Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: letm1 ENSDARG00000056978

.

Description

leucine zipper-EF-hand containing transmembrane protein 1 [Source:NCBI gene;Acc:570745]

Gene Synonyms

fc31h08, fc58h01, let-m1, wu:fc31h08, wu:fc58h01, zgc:109969

Location

Chromosome 13: 13,033,424-13,099,800 forward strand.

GRCz11:CM002897.2

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079558.7	letm1-201	2738	757aa	ENSDARP00000074011.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LY46	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000159441.3	letm1-203	2939	768aa	ENSDARP00000131431.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IDC7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000109906.3	letm1-202	1055	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

.

Summary

.

.