Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SSBP4 ENSDARG00000056490

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Description

zgc:110158 [Source:ZFIN;Acc:ZDB-GENE-050522-195]

Location

Chromosome 2: 41,577,507-41,723,487 reverse strand.

GRCz11:CM002886.2

About this gene

This gene has 5 transcripts (splice variants), 125 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000170171.3	SSBP4-205	1595	385aa	ENSDARP00000134550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IGD1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138822.3	SSBP4-203	6467	265aa	ENSDARP00000118681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QM58	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000004816.11	SSBP4-202	3269	293aa	ENSDARP00000018827.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QK89	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000155577.3	SSBP4-204	1520	357aa	ENSDARP00000128426.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503T8	-
ENSDART00000137476.2	SSBP4-201	231	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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