Gene: fras1 ENSDARG00000054619

Description

Fraser extracellular matrix complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060526-68]

Gene Synonyms

id:ibd5080, pif, pinfin, si:ch211-191a6.5, wu:fc10b09

Location

Chromosome 5: 38,837,429-39,086,768 forward strand.

GRCz11:CM002889.2

About this gene

This gene has 5 transcripts (splice variants), 102 orthologues, 38 paralogues and is associated with 26 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160236.2	fras1-205	12268	4003aa	ENSDARP00000138474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQJ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000137112.2	fras1-203	12999	3936aa	ENSDARP00000116842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BHG4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000097856.5	fras1-202	11970	3989aa	ENSDARP00000088628.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6IDE3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000076845.7	fras1-201	11913	3970aa	ENSDARP00000071316.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q633	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000144008.2	fras1-204	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Gene: fras1 ENSDARG00000054619

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Gene: fras1 ENSDARG00000054619

Summary

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