Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:ch211-198n5.11 ENSDARG00000054400

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Description

si:ch211-198n5.11 [Source:ZFIN;Acc:ZDB-GENE-050411-52]

Gene Synonyms

im:7143041

Location

Chromosome 8: 16,676,894-16,688,511 forward strand.

GRCz11:CM002892.2

About this gene

This gene has 5 transcripts (splice variants), 108 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000076586.6	si:ch211-198n5.11-201	2107	603aa	ENSDARP00000071058.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9C3S0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136478.3	si:ch211-198n5.11-203	748	50aa	ENSDARP00000117228.1	Nonsense mediated decay	E9QCI6	-
ENSDART00000144477.2	si:ch211-198n5.11-204	1269	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134041.2	si:ch211-198n5.11-202	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000146634.2	si:ch211-198n5.11-205	440	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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