Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: vti1a ENSDARG00000045065

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Description

vesicle transport through interaction with t-SNAREs 1A [Source:ZFIN;Acc:ZDB-GENE-050809-135]

Gene Synonyms

zgc:109895

Location

Chromosome 12: 31,161,564-31,422,536 reverse strand.

GRCz11:CM002896.2

About this gene

This gene has 3 transcripts (splice variants), 198 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000066256.8	vti1a-201	757	217aa	ENSDARP00000066255.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q7S0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000153172.2	vti1a-202	739	154aa	ENSDARP00000127122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JA57	-
ENSDART00000186075.1	vti1a-203	675	224aa	ENSDARP00000146239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q5I2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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