Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ppt1 ENSDARG00000039980

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Description

palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) [Source:ZFIN;Acc:ZDB-GENE-040426-2653]

Gene Synonyms

wu:fj17f04, zgc:63969

Location

Chromosome 19: 43,736,269-43,757,568 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 5 transcripts (splice variants), 222 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000058491.7	ppt1-201	1609	303aa	ENSDARP00000058490.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8J6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171806.3	ppt1-205	5631	303aa	ENSDARP00000139466.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8J6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151309.2	ppt1-204	836	194aa	ENSDARP00000126214.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ITF0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147328.4	ppt1-203	800	206aa	ENSDARP00000126240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ITH5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142202.3	ppt1-202	904	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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