Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: lhx2a ENSDARG00000037964

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Description

LIM homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-091118-109]

Gene Synonyms

si:dkey-261o10.1

Location

Chromosome 21: 8,407,545-8,422,363 reverse strand.

GRCz11:CM002905.2

About this gene

This gene has 3 transcripts (splice variants), 6 orthologues and 31 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134360.3	lhx2a-202	1366	328aa	ENSDARP00000121419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QBI8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000055329.6	lhx2a-201	1351	327aa	ENSDARP00000055328.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R0M6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000138040.2	lhx2a-203	442	147aa	ENSDARP00000113469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R9N1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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