Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sgms1 ENSDARG00000029621

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Description

sphingomyelin synthase 1 [Source:ZFIN;Acc:ZDB-GENE-061103-295]

Gene Synonyms

zgc:154039

Location

Chromosome 12: 6,065,661-6,114,296 forward strand.

GRCz11:CM002896.2

About this gene

This gene has 3 transcripts (splice variants), 27 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142418.4	sgms1-202	2522	404aa	ENSDARP00000117358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMN0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000164885.2	sgms1-203	1219	404aa	ENSDARP00000135828.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMN0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139054.2	sgms1-201	693	113aa	ENSDARP00000117698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDV6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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