high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
hmga1, hmgiy, wu:fb12b06, wu:fb18f11, wu:fc19f01, wu:fi38b05, zgc:85677
Chromosome 23: 3,751,451-3,759,692 reverse strand.
GRCz11:CM002907.2
This gene has 8 transcripts (splice variants), 41 orthologues and 1 paralogue.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSDART00000028885.9 | hmga1a-201 | 2593 | 101aa | ENSDARP00000036107.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q6NV11 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSDART00000189382.1 | hmga1a-208 | 2416 | 100aa | ENSDARP00000154454.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9QD31 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSDART00000137826.3 | hmga1a-206 | 964 | 101aa | ENSDARP00000115025.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q6NV11 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSDART00000132205.3 | hmga1a-203 | 814 | 101aa | ENSDARP00000118077.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q6NV11 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSDART00000137707.3 | hmga1a-205 | 782 | 103aa | ENSDARP00000134077.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0R4IEW9 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
| ENSDART00000131536.2 | hmga1a-202 | 733 | 100aa | ENSDARP00000117564.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9QD31 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSDART00000139408.2 | hmga1a-207 | 405 | 45aa | ENSDARP00000114774.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9QEA0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, |
| ENSDART00000136394.2 | hmga1a-204 | 745 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
