Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: pcbp4 ENSDARG00000024276

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Description

poly(rC) binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2122]

Gene Synonyms

wu:fc68f03, zgc:65870, zgc:77347

Location

Chromosome 22: 32,289,567-32,507,966 reverse strand.

GRCz11:CM002906.2

About this gene

This gene has 4 transcripts (splice variants), 200 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000137945.3	pcbp4-202	4125	464aa	ENSDARP00000118901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8M8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000104693.5	pcbp4-201	4086	442aa	ENSDARP00000095464.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SZN9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148681.2	pcbp4-203	650	191aa	ENSDARP00000124370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0J9YJ03	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148886.3	pcbp4-204	455	152aa	ENSDARP00000123850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W4X8	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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