Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: pdlim1 ENSDARG00000019845

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Description

PDZ and LIM domain 1 (elfin) [Source:ZFIN;Acc:ZDB-GENE-030131-5227]

Gene Synonyms

clim1, elfin, wu:fa19a03, wu:fy34f10, zgc:110681

Location

Chromosome 13: 25,762,908-25,774,183 reverse strand.

GRCz11:CM002897.2

About this gene

This gene has 3 transcripts (splice variants), 218 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046981.6	pdlim1-201	1724	322aa	ENSDARP00000046980.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5V6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131792.2	pdlim1-202	378	126aa	ENSDARP00000114036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5V5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000145640.2	pdlim1-203	883	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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