Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: vps13d ENSDARG00000017986

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Description

vacuolar protein sorting 13 homolog D [Source:ZFIN;Acc:ZDB-GENE-050912-1]

Location

Chromosome 23: 21,696,560-21,763,598 reverse strand.

GRCz11:CM002907.2

About this gene

This gene has 3 transcripts (splice variants), 193 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046613.9	vps13d-201	11871	3956aa	ENSDARP00000046612.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F307	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148128.2	vps13d-203	6932	2233aa	ENSDARP00000115963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QAQ5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145408.2	vps13d-202	6531	2099aa	ENSDARP00000122356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QH42	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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