Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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ID History
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Gene: tmem50a ENSDARG00000015757

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Description

transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]

Gene Synonyms

fj33b04, wu:fj33b04, zgc:55322

Location

Chromosome 13: 45,485,185-45,495,562 forward strand.

GRCz11:CM002897.2

About this gene

This gene has 5 transcripts (splice variants) and 213 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134730.3	tmem50a-203	1687	164aa	ENSDARP00000120219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803R8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000019774.7	tmem50a-201	1678	164aa	ENSDARP00000009902.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803R8	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000142381.2	tmem50a-204	582	150aa	ENSDARP00000116685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A503	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000188004.1	tmem50a-205	503	164aa	ENSDARP00000147889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803R8	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000133635.2	tmem50a-202	923	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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