Gene: slc4a4a ENSDARG00000013730

Description

solute carrier family 4 member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]

Gene Synonyms

NBC1, NBCe1, id:ibd2520, si:dkey-256m11.1, slc4a4

Location

Chromosome 5: 45,746,457-45,877,387 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 6 transcripts (splice variants), 207 orthologues, 13 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000183714.1	slc4a4a-205	6323	1114aa	ENSDARP00000144892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PYB9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000041503.9	slc4a4a-201	6227	1082aa	ENSDARP00000041502.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QHT2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000188229.1	slc4a4a-206	3417	1073aa	ENSDARP00000150925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QD45	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000124336.4	slc4a4a-202	2810	444aa	ENSDARP00000105268.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QPJ5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000143520.2	slc4a4a-204	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000136688.2	slc4a4a-203	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Gene: slc4a4a ENSDARG00000013730

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Gene: slc4a4a ENSDARG00000013730

Summary

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