Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: hnrpkl ENSDARG00000007034

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Description

heterogeneous nuclear ribonucleoprotein K, like [Source:ZFIN;Acc:ZDB-GENE-040426-1923]

Gene Synonyms

wu:fc19f05, wu:fc48a08, wu:fc84b09, wu:fd16g02, zgc:56206

Location

Chromosome 5: 55,602,720-55,625,247 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 6 transcripts (splice variants), 331 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000133156.3	hnrpkl-203	2288	431aa	ENSDARP00000116598.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLJ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000176341.2	hnrpkl-206	3357	431aa	ENSDARP00000144315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLJ8	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000005671.10	hnrpkl-201	3324	420aa	ENSDARP00000008648.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PB84	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000139236.2	hnrpkl-204	1582	84aa	ENSDARP00000114704.1	Nonsense mediated decay	Q7ZUT0	-
ENSDART00000142912.3	hnrpkl-205	711	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000132290.2	hnrpkl-202	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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