Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: stmn1a ENSDARG00000004169

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Description

stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]

Gene Synonyms

cb959, stmn1, wu:fb14e04, zgc:136942

Location

Chromosome 19: 17,205,143-17,210,928 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 4 transcripts (splice variants), 239 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000007906.11	stmn1a-201	1083	148aa	ENSDARP00000023151.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RLQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000164683.3	stmn1a-204	3914	163aa	ENSDARP00000133564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4II97	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000151228.2	stmn1a-203	221	51aa	ENSDARP00000125747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3IS80	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000132662.3	stmn1a-202	839	73aa	ENSDARP00000125979.1	Nonsense mediated decay	I3IST5	-

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Summary

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