Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: stx16 ENSDARG00000003307

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Description

syntaxin 16 [Source:ZFIN;Acc:ZDB-GENE-060810-113]

Gene Synonyms

im:7158627

Location

Chromosome 6: 49,722,970-49,740,750 forward strand.

GRCz11:CM002890.2

About this gene

This gene has 3 transcripts (splice variants), 199 orthologues, 17 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154738.2	stx16-201	4762	307aa	ENSDARP00000128591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WEE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000190452.1	stx16-203	912	303aa	ENSDARP00000146981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q071	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000155934.3	stx16-202	573	84aa	ENSDARP00000128214.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WDB5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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