Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ptpn4b ENSDARG00000000183

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Description

protein tyrosine phosphatase non-receptor type 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6259]

Gene Synonyms

fi40g11, si:rp71-1n18.2, wu:fi40g11

Location

Chromosome 22: 11,778,053-11,833,334 reverse strand.

GRCz11:CM002906.2

About this gene

This gene has 3 transcripts (splice variants), 164 orthologues and 55 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125423.4	ptpn4b-202	3428	930aa	ENSDARP00000105661.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1MTL1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000000192.10	ptpn4b-201	6443	935aa	ENSDARP00000000192.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QFY3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000126784.3	ptpn4b-203	653	185aa	ENSDARP00000112064.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1MTL2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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