Transcript: ENSBTAT00000064817.3 PTCH1-204

Description

patched 1 [Source:VGNC Symbol;Acc:VGNC:106881]

Location

Primary_assembly 8: 82,099,900-82,168,693 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 35 domains and features and is associated with 3226 variant alleles.

Gene

This transcript is a product of gene ENSBTAG00000009903.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000108249.1	PTCH1-202	5617	1453aa	ENSBTAP00000079227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000130372.1	PTCH1-201	5591	1427aa	ENSBTAP00000090335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000064817.3	PTCH1-204	5474	1388aa	ENSBTAP00000055675.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N1D5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000013074.6	PTCH1-203	5461	1401aa	ENSBTAP00000013074.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MVV4	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 5,474 bps, Translation length: 1,388 residues

Version

ENSBTAT00000064817.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSBTAT00000064817.3 PTCH1-204

Summary

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Transcript: ENSBTAT00000064817.3 PTCH1-204

Summary

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