homer scaffold protein 2 [Source:VGNC Symbol;Acc:VGNC:29902]
Primary_assembly 21: 23,113,622-23,204,335 reverse strand.
This transcript has 9 exons, is annotated with 17 domains and features, is associated with 5084 variant alleles and maps to 12 oligo probes.
This transcript is a product of gene ENSBTAG00000017715.8 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSBTAT00000083397.2 | HOMER2-201 | 1870 | 366aa | ENSBTAP00000058117.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3Q1LHC4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSBTAT00000119912.1 | HOMER2-205 | 2155 | 351aa | ENSBTAP00000092426.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0AAA9T6Q1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSBTAT00000066548.3 | HOMER2-206 | 2033 | 346aa | ENSBTAP00000072082.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3Q1NJ19 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSBTAT00000092525.1 | HOMER2-202 | 1978 | 354aa | ENSBTAP00000082333.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0AAA9SIF8 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSBTAT00000082680.2 | HOMER2-203 | 1955 | 344aa | ENSBTAP00000074431.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A3Q1NNK9 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSBTAT00000017648.8 | HOMER2-204 | 1883 | 343aa | ENSBTAP00000017648.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F6PRD5 Q0VCH1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |