Transcript: ENSBTAT00000003856.7 LRCH1-201

Description

leucine rich repeats and calponin homology domain containing 1 [Source:VGNC Symbol;Acc:VGNC:53822]

Location

About this transcript

This transcript has 20 exons, is annotated with 33 domains and features and is associated with 7251 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000003856.7	LRCH1-201	2497	765aa	ENSBTAP00000003856.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MDS5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000067507.2	LRCH1-202	3297	698aa	ENSBTAP00000068059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MCI2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 2,497 bps, Translation length: 765 residues

Version

ENSBTAT00000003856.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.