Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSBTAT00000034655.6 COL18A1-203

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Description

collagen type XVIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:27559]

Location

Primary_assembly 1: 145,244,024-145,296,589 forward strand.

About this transcript

This transcript has 41 exons, is annotated with 56 domains and features and is associated with 7156 variant alleles.

Gene

This transcript is a product of gene ENSBTAG00000023907.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000034655.6	COL18A1-203	5071	1553aa	ENSBTAP00000034542.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N6W9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000083892.2	COL18A1-201	4245	1330aa	ENSBTAP00000062335.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E654	-
ENSBTAT00000113882.1	COL18A1-202	4209	1318aa	ENSBTAP00000090286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Protein summary

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Protein domains for ENSBTAP00000034542.6

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