Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL9A1 ENSBTAG00000035054

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Description

collagen type IX alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:53787]

Location

Primary_assembly 9: 9,301,094-9,391,763 reverse strand.

ARS-UCD1.3:CM008176.2

About this gene

This gene has 2 transcripts (splice variants), 197 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000098730.1	COL9A1-202	3744	922aa	ENSBTAP00000074951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000061549.4	COL9A1-201	3117	691aa	ENSBTAP00000053422.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MND9	-

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Summary

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