Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
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External references
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ID History
- Gene history

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Gene: SYCP1 ENSBTAG00000032071

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Description

synaptonemal complex protein 1 [Source:VGNC Symbol;Acc:VGNC:35508]

Location

Primary_assembly 3: 28,331,655-28,485,801 reverse strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 7 transcripts (splice variants) and 179 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000123249.1	SYCP1-201	3561	1001aa	ENSBTAP00000099621.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000131073.1	SYCP1-202	3498	980aa	ENSBTAP00000086808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000066956.2	SYCP1-205	3473	980aa	ENSBTAP00000074043.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MIB7	-
ENSBTAT00000082621.2	SYCP1-203	3423	955aa	ENSBTAP00000059018.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LUU9	-
ENSBTAT00000130409.1	SYCP1-206	3370	950aa	ENSBTAP00000078867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000030769.5	SYCP1-207	3288	950aa	ENSBTAP00000030740.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BLN1	-
ENSBTAT00000071167.2	SYCP1-204	3277	907aa	ENSBTAP00000069713.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MKG0	-

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Summary

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