Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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Ontologies
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ID History
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Gene: PNN ENSBTAG00000026995

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Description

pinin, desmosome associated protein [Source:VGNC Symbol;Acc:VGNC:33087]

Location

Primary_assembly 21: 49,159,939-49,166,919 forward strand.

ARS-UCD1.3:CM008188.2

About this gene

This gene has 4 transcripts (splice variants) and 216 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000038642.4	PNN-204	3309	721aa	ENSBTAP00000038454.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3SYT5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000130005.1	PNN-203	2161	695aa	ENSBTAP00000082918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000110903.1	PNN-202	448	124aa	ENSBTAP00000098161.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000130497.1	PNN-201	433	119aa	ENSBTAP00000088690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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