Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC19A1 ENSBTAG00000024162

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Description

solute carrier family 19 member 1 [Source:VGNC Symbol;Acc:VGNC:34709]

Location

Primary_assembly 1: 145,296,836-145,326,246 reverse strand.

ARS-UCD1.3:CM008168.2

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000043357.4	SLC19A1-202	2536	572aa	ENSBTAP00000040932.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N2M7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000082124.2	SLC19A1-204	2788	525aa	ENSBTAP00000058281.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MU29	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000122999.1	SLC19A1-203	2242	526aa	ENSBTAP00000083090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000084792.2	SLC19A1-201	1825	538aa	ENSBTAP00000062086.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LPR2	-

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Summary

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