Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
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Genetic Variation
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ID History
- Gene history

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Gene: TPRA1 ENSBTAG00000022575

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Description

transmembrane protein adipocyte associated 1 [Source:VGNC Symbol;Acc:VGNC:54506]

Location

Primary_assembly 22: 59,921,386-59,930,157 forward strand.

ARS-UCD1.3:CM008189.2

About this gene

This gene has 3 transcripts (splice variants) and 196 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000106861.1	TPRA1-202	1961	445aa	ENSBTAP00000079454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000043569.5	TPRA1-201	1670	358aa	ENSBTAP00000041130.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNF1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000085728.2	TPRA1-203	1614	385aa	ENSBTAP00000063085.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0C4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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