Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: C11H9orf78 ENSBTAG00000020307

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Description

chromosome 11 C9orf78 homolog [Source:VGNC Symbol;Acc:VGNC:52623]

Location

Primary_assembly 11: 100,205,723-100,214,961 reverse strand.

ARS-UCD1.3:CM008178.2

About this gene

This gene has 4 transcripts (splice variants) and 210 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000090511.1	C11H9orf78-202	1463	289aa	ENSBTAP00000102253.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000115230.1	C11H9orf78-204	1576	269aa	ENSBTAP00000097926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000027065.4	C11H9orf78-203	1391	265aa	ENSBTAP00000027065.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1JQC8	-
ENSBTAT00000103466.1	C11H9orf78-201	985	289aa	ENSBTAP00000096713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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