Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CABP1 ENSBTAG00000020049

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Description

calcium binding protein 1 [Source:VGNC Symbol;Acc:VGNC:53893]

Location

Primary_assembly 17: 62,894,560-62,919,976 forward strand.

ARS-UCD1.3:CM008184.2

About this gene

This gene has 6 transcripts (splice variants), 294 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000131660.1	CABP1-202	1558	370aa	ENSBTAP00000076226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000083615.2	CABP1-203	1320	226aa	ENSBTAP00000072049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9N1R0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000084965.2	CABP1-204	1143	167aa	ENSBTAP00000069067.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NCF9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000026714.5	CABP1-205	690	229aa	ENSBTAP00000026714.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DIX2	-
ENSBTAT00000044919.4	CABP1-206	674	209aa	ENSBTAP00000042361.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9N1R0	-
ENSBTAT00000076129.2	CABP1-201	630	106aa	ENSBTAP00000061568.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0P2	-

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Summary

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