Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN3 ENSBTAG00000018841

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Description

protein tyrosine phosphatase non-receptor type 3 [Source:VGNC Symbol;Acc:VGNC:33538]

Location

Primary_assembly 8: 98,927,804-99,092,642 reverse strand.

ARS-UCD1.3:CM008175.2

About this gene

This gene has 8 transcripts (splice variants), 198 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000110981.1	PTPN3-206	4003	1056aa	ENSBTAP00000079297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000133595.1	PTPN3-207	3907	1024aa	ENSBTAP00000093948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000079084.2	PTPN3-208	3764	934aa	ENSBTAP00000057932.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LMJ6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000091048.1	PTPN3-202	3703	924aa	ENSBTAP00000094985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000025085.7	PTPN3-203	3680	912aa	ENSBTAP00000025085.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BIH4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000127982.1	PTPN3-205	3581	863aa	ENSBTAP00000100192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000073292.2	PTPN3-204	3476	869aa	ENSBTAP00000061804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LWJ9	-
ENSBTAT00000113798.1	PTPN3-201	3346	867aa	ENSBTAP00000092402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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