Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LMO1 ENSBTAG00000016320

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Description

LIM domain only 1 [Source:VGNC Symbol;Acc:VGNC:30933]

Location

Primary_assembly 15: 44,281,248-44,323,115 forward strand.

ARS-UCD1.3:CM008182.2

About this gene

This gene has 6 transcripts (splice variants), 244 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000110151.1	LMO1-203	905	198aa	ENSBTAP00000095995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000045558.3	LMO1-202	1268	156aa	ENSBTAP00000042937.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LTT8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000075089.2	LMO1-201	971	155aa	ENSBTAP00000057677.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0P5B3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000116407.1	LMO1-205	959	160aa	ENSBTAP00000082955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000100669.1	LMO1-206	865	171aa	ENSBTAP00000098665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000079808.2	LMO1-204	797	172aa	ENSBTAP00000060511.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LTT8	-

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Summary

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