Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPNS1 ENSBTAG00000014872

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Description

calpain small subunit 1 [Source:VGNC Symbol;Acc:VGNC:52184]

Location

Primary_assembly 18: 46,798,895-46,808,286 forward strand.

ARS-UCD1.3:CM008185.2

About this gene

This gene has 5 transcripts (splice variants), 293 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000067485.2	CAPNS1-202	1216	306aa	ENSBTAP00000074292.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MIY3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000084431.2	CAPNS1-203	1559	290aa	ENSBTAP00000070211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M8H9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000103816.1	CAPNS1-201	1250	233aa	ENSBTAP00000080582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000019803.5	CAPNS1-204	1237	249aa	ENSBTAP00000019803.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P13135	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000096489.1	CAPNS1-205	769	93aa	ENSBTAP00000099008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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