Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: VPS13B ENSBTAG00000012357

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Description

vacuolar protein sorting 13 homolog B [Source:VGNC Symbol;Acc:VGNC:107021]

Location

Primary_assembly 14: 64,453,509-65,308,567 reverse strand.

ARS-UCD1.3:CM008181.2

About this gene

This gene has 4 transcripts (splice variants) and 217 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000080548.2	VPS13B-202	12948	3924aa	ENSBTAP00000067297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MEI1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000046137.4	VPS13B-201	12348	3738aa	ENSBTAP00000043463.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BFL6	-
ENSBTAT00000075247.2	VPS13B-203	11950	3829aa	ENSBTAP00000058618.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LTX8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000122285.1	VPS13B-204	1499	415aa	ENSBTAP00000091225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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