Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCUBE1 ENSBTAG00000011275

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Description

signal peptide, CUB domain and EGF like domain containing 1 [Source:VGNC Symbol;Acc:VGNC:34371]

Location

Primary_assembly 5: 113,975,802-114,102,749 reverse strand.

ARS-UCD1.3:CM008172.2

About this gene

This gene has 4 transcripts (splice variants), 198 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000037639.6	SCUBE1-201	4170	1019aa	ENSBTAP00000037465.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MJF1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000083289.2	SCUBE1-202	4080	989aa	ENSBTAP00000067935.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MG20	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000084882.2	SCUBE1-203	3972	976aa	ENSBTAP00000067746.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MAT8	-
ENSBTAT00000070646.2	SCUBE1-204	996	332aa	ENSBTAP00000058194.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MTW1	-

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Summary

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