Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SGPL1 ENSBTAG00000009984

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Description

sphingosine-1-phosphate lyase 1 [Source:VGNC Symbol;Acc:VGNC:34547]

Location

Primary_assembly 28: 26,973,479-27,026,784 forward strand.

ARS-UCD1.3:CM008195.2

About this gene

This gene has 4 transcripts (splice variants), 211 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000073515.2	SGPL1-202	4247	598aa	ENSBTAP00000069827.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5D788	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000070391.2	SGPL1-203	4157	568aa	ENSBTAP00000057756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5D788	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000047413.4	SGPL1-201	4040	567aa	ENSBTAP00000044620.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5D788	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000080801.2	SGPL1-204	4014	577aa	ENSBTAP00000057981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LM94	-

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Summary

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