Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene: SKINT1 ENSBTAG00000009192

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Description

selection and upkeep of intraepithelial T cells 1 [Source:NCBI gene (formerly Entrezgene);Acc:528184]

Location

Primary_assembly 3: 98,066,623-98,095,241 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 3 transcripts (splice variants), 64 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000122902.1	SKINT1-202	2161	384aa	ENSBTAP00000102470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000115769.1	SKINT1-203	2053	348aa	ENSBTAP00000079739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000005973.6	SKINT1-201	1100	354aa	ENSBTAP00000005973.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2ZEZ4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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