Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
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ID History
- Gene history

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Gene: NDC1 ENSBTAG00000006625

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Description

NDC1 transmembrane nucleoporin [Source:VGNC Symbol;Acc:VGNC:31930]

Location

Primary_assembly 3: 92,394,657-92,465,556 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 3 transcripts (splice variants) and 199 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000086345.2	NDC1-201	3555	784aa	ENSBTAP00000062543.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M337	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000075677.2	NDC1-202	3310	750aa	ENSBTAP00000061329.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LVB4	-
ENSBTAT00000043246.4	NDC1-203	2343	692aa	ENSBTAP00000040833.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BM06	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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